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© 2016-19 Jake Socha

Publications

 

*Indicates student author.

2019
Going the distance: the biomechanics of gap-crossing behaviors

Graham, M.* and J.J. Socha. Journal of Experimental Zoology A. Early View. Invited paper for special issue in honor of R. McNeil Alexander.

  | Download: | Early View pdf]
Functional compartmentalization in the hemocoel of insects

Pendar*, H., J. Aviles*, K. Adjerid*, C. Schoenewald*, and J.J. Socha. Scientific Reports. 9(1): 6075.

  | Download: | pdf]
2018
Patterns of tracheal compression in the thorax of the ground beetle, Platynus decentis

Hochgraf, J.S.*, J.S. Waters, J.J. Socha. 2018. Yale Journal of Biology and Medicine. 91(4): 409-430.

  | Download: | pdf+SI]
How temperature influences the viscosity of hornworm hemolymph

Kenny, M.C.*, M.N. Giarra*, E. Granata*, and J.J. Socha. 2018. Journal of Experimental Biology. 221 (21): jeb186338.

  | Download:  [pdf+SI | pdf]
Developmental plasticity and stability in the tracheal networks supplying Drosophila flight muscle in response to rearing oxygen level

Harrison, J.F., J.S. Waters, T.A. Biddulph, A. Kovacevic, C.J. Klok, and J.J. Socha. 2018. Journal of Insect Physiology. 106: 189-198.

| Download: [pdf]
 
Burst mode pumping: A new mechanism of drinking in mosquitoes

Kikuchi, K., M.A. Stremler, W.-K. Lee, S. Chatterjee*, O. Mochizuki, and J.J. Socha. 2018. Scientific Reports. 8(1): 4885.

Movie 1Movie 2 | Movie 3 | Movie 4 | Movie 5 | Movie 6 Supplement | Download: [pdf]
NSF video animation | Interview of Socha | APS press release | Virginia Tech press release
2017
Control of gliding in a flying snake-inspired n-chain model

Jafari, F., S. Tahmasian, S.D. Ross, and J.J. Socha. 2017. Bioinspiration and Biomimetics. 12(6) 066002.

Movie 1Movie 2 | Download: [pdf]
Global dynamics of non-equilibrium gliding in animals

Yeaton, I.J., J.J. Socha, and S.D. Ross. 2017. Bioinspiration and Biomimetics. 10(2) 026013.

  Noted as a Highlight of 2017 | Download: [pdf]
2016
Bare-hand volume cracker for raw volume data analysis

Laha, B., D.A. Bowman, and J.J. Socha. 2016. Frontiers in Robotics and AI. 3: 56.

| Download: [pdf]
Multigenerational effects of rearing atmospheric oxygen level on the tracheal dimensions and diffusing capacities of pupal and adult Drosophila melanogaster

Klok, C.J., A. Kaiser, J.J. Socha, W.-K. Lee, J.F. Harrison. 2016. In Hypoxia: Translation in Progress. Springer US, 285-300.(book chapter) 

| Download: [pdf]

Recovering signals in physiological systems with large datasets

Pendar, H., J.J. Socha, and J. Chung. 2016. Biology Open. 5, 1163-1174.

 Movie | Supplement | Download: [pdf]
2015
Dogs lap using acceleration-driven open pumping

Gart, S.*, J.J. Socha, P.P. Vlachos, and S. Jung. 2015. Proceedings of the National Academy of Sciences. 112 (52): 15798–15802.

NY Times Science Take | Press release | Journal cover | Download: [pdf]

Structure of tracheae and the functional implications for collapse in the American cockroach

Webster*, M., Socha, J.J., Teresi, L., Nardinocchi, P., De Vita, R. 2015. Bioinspiration & Biomimetics. 10 (2015): 066011

| Download: [pdf]

Estimation of instantaneous gas exchange in flow-through respirometry systems: A modern revision of Bartholomew's Z-transform method

 

Pendar*, H. and J.J. Socha. 2015. PLoS ONE.10 (10): e0139508.

 

Code (direct download) (Github) | Supplement | Download: [pdf]

Tracheal compression in pupae of the beetle Zophobas morio

 

Pendar*, H., M. Kenny*, and J.J. Socha. 2015. Biology Letters. 11 (6): 20150259

 

Science Shot | Cover image | Video abstract | Movies | Dryad data | Supplement | Download: [pdf]

 

 
How animals glide: from trajectory to morphology

 

Socha, J.J., F. Jafari*, Y. Munk, and G. Byrnes. 2015. Canadian Journal of Zoology. 93: 901-924.

 

| Download: [pdf]

 

2014
 
Of snakes and robots

 

Socha. J.J. 2014. Science. 346 (6206): 160-161.

 

| Download: [pdf]

 
A theoretical analysis of gliding in flying snakes

 

Jafari, F.*, S.D. Ross, P.P. Vlachos, and J.J. Socha. 2014. Bioinspiration and Biomimetics. 9(2): 025014.

 

| Download: [pdf]

 
Variation in tensile properties of tracheal tubes in the American cockroach

 

Becker, W.*, M.R. Webster*, J.J. Socha, and R. De Vita. 2014. Smart Materials and Structures. 23 (5): 057001.

 

| Download: [pdf]

 
Effects of VR system fidelity on analzing isosurface visualization of volume datasets

 

Laha, B.*, D.A. Bowman, and J.J. Socha. 2014. IEEE Transactions on Visualization and Computer Graphics (Proceedings of Virtual Reality 2013). 20 (4): 513-522.

 

| Download: [pdf]

 
Lift and wakes of flying snakes

 

Krishnan, A.* J.J. Socha, P.P. Vlachos, and L.A. Barba. 2014. Physics of Fluids. 26: 03190.

 

| Download: [pdf]

 
Aerodynamics of the flying snake, Chrysopelea paradisi: how a bluff-body cross-sectional shape contributes to gliding performance

 

Holden, D.*, J.J. Socha, N. Cardwell, and P.P. Vlachos. 2014. Journal of Experimental Biology. 217 (3): 382-394.

 

Video abstract | Journal supplementary video (free via pdf) | Movie 1 | Movie 2 | Movie 3 | Download: [pdf]

NY Times Science Take

 

 
2013
 
Hypoxia-induced compression in the tracheal system of the tobacco hornworm caterpillar, Manduca sexta L

 

Greenlee, K.J., J.J. Socha, H.B. Eubanks*, G. Thapa, P. Pedersen, W.-K. Lee, and S.D. Kirkton. 2013. Journal of Experimental Biology. 216: 2293-2301.

 

Journal supplementary video (free via pdf) | Movie 1 | Movie 2 | Download: [pdf]

 
 
Dynamics of tracheal compression in the horned passalus beetle

 

J.S. Waters*, W.-K. Lee, M.W. Westneat, and J.J. Socha. 2013. American Journal of Physiology: Regulatory, Integrative and Comparative Physiology. 304: R621-R627.

 

Movie S1.mov | Movie S2.mov | Movie S3.mov | Download: [pdf]

 
 
How locusts breathe

 

Harrison, J.F., J.S. Waters*, A.J. Cease, J.M. VandenBrooks, V. Callier, C.J. Klok, K. Shaffer, and J.J. Socha. 2013. Physiology. 28: 18-27.

 

| Download: [pdf]

 
Biomechanics of turtle shells: how whole shells fail in compression

 

Magwene, P.M. and J.J. Socha. 2013. Journal of Experimental Zoology A. 319A:86-98. [published online, 2012] 

 

| Download: [pdf]

 
2011
 
Gliding flight in Chrysopelea: Turning a snake into a wing

 

Socha, J.J.  2011. Integrative and Comparative Biology. 51(6): 969–982.

 

Movie 1 | Movie 2 | Download: [pdf]

 
Mechanical properties of tracheal tubes in the American cockroach (Periplaneta americana)

 

Webster, M.*, R. De Vita, J. Twigg, J.J. Socha. 2011.  Journal of Smart Materials and Structures, 20 (2011) 094017.

 

| Download: [pdf]

 
2010
 
Non-equilibrium trajectory dynamics and the kinematics of gliding in a flying snake

 

Socha, J.J., K. Miklasz, F. Jafari*, and P.P. Vlachos. 2010. Bioinspiration and Biomimetics, 5 (2010) 045002.

 

Summary video | Journal supplementary video | Press | Download: [pdf] [corrigendum]

 

 
Visceral-locomotory pistoning in crawling caterpillars (Manduca sexta)

 

Simon, M.A.*, W.A. Woods, Y.V. Serebrenik, S.M. Simon, L.I. van Griethuijsen, J.J. Socha, W.-K. Lee, and B.A. Trimmer. 2010.  Current Biology 20: 1-6. 

 

Video abstract | Movie S1 | Movie S2 | Movie S3 | Download: [pdf]

 
 
Issues of convection in insect respiration: Insights from synchrotron x-ray imaging and beyond

 

Socha, J.J., T. Förster*, and K.J. Greenlee. 2010. Respiratory Physiology and Neurobiology, 173S (2010) S65–S73.

 

| Download: [pdf]

 
Effects of body cross-sectional shape on flying snake aerodynamics

 

Miklasz, K.*, M. LaBarbera, X. Chen, and J.J. Socha. 2010. Experimental Mechanics, 50 (9): 1335-1348.

 

| Download: [pdf]

 
Canaliculi in the tessellated skeleton of cartilaginous fishes

 

Dean, M.N.*, J.J. Socha, K.M. Claeson, B.K. Hall, and A.P. Summers. 2010. Journal of Applied Ichthyology 26(2):263-267.

 

| Download: [pdf]

 
2009
 
Synchrotron x-ray visualisation of ice formation in insects during lethal and non-lethal freezing

 

Sinclair, B.J., A.G. Gibbs, W.-K. Lee, A. Rajamohan*, S.P. Roberts, and J.J. Socha. 2009. PLoS One 2009 4(12):e8259.

 

Movies | Press release | Download: [pdf]

 
A plesiosaur containing an ichthyosaur embryo as stomach contents from the Sundance Formation of the Bighorn Basin, Wyoming

 

O’Keefe, F.R., H.P. Street, J.P. Cavigelli, J.J. Socha, and R.D. O’Keefe. 2009. Journal of Vertebrate Paleontology 29(4): 1306-1310.

 

| Download: [pdf]

 
Direct visualization of hemolymph flow in the heart of a grasshopper (Schistocerca americana)

 

Lee, W.-K. and J.J. Socha. 2009. BMC Physiology 2009 9:2.

 

| Download: [pdf]

 
2008
 
Correlated patterns of tracheal compression and convective gas exchange in a carabid beetle

 

Socha, J.J., W.-K. Lee, J.F. Harrison, J.S. Waters*, Fezzaa, K., M.W. Westneat. 2008. Journal of Experimental Biology 211: 3409-3420.

 

Movies | Cover image | Download: [pdf]

 
Advances in biological structure, function and physiology using synchrotron x-ray imaging

 

Westneat, M.W., J.J. Socha, and W.-K. Lee. 2008.  Annual Review of Physiology 70: 119-142.

| Download: [pdf]

 
Use of synchrotron tomography to image naturalistic anatomy in insects

 

Socha, J.J. and F. De Carlo. 2008. In: Developments in X-Ray Tomography VI: 2008, San Diego, CA, USA: SPIE; 2008: 70780A-70787.

 

| Download: [pdf]

 
2007
 
Increase in tracheal investment with beetle size supports hypothesis of oxygen limitation on insect gigantism

 

Kaiser, A., C.J. Klok, J.J. Socha, W.-K. Lee, M.C. Quinlan, and J.F. Harrison. 2007.  Proceedings of the National Academy of Sciences 104 (32): 13198-13203.

 

Press release | Commentary | Download: [pdf]

 
Real-time phase-contrast x-ray imaging: a new technique for the study of animal form and function

 

Socha, J.J., M.W. Westneat, J.F. Harrison, J.S. Waters, and W.-K. Lee. 2007.  BMC Biology 2007 5:6.

 

Movies | Download: [pdf]

 
2006
 
Becoming airborne without legs: the kinematics of take-off in a flying snake, Chrysopelea paradisi

 

Socha, J.J.* 2006.  Journal of Experimental Biology 209 (17): 3358-3369.

 

Movies | Cover image | Download: [pdf]   [pdf with cover]

 
2005
 
A three-dimensional kinematic analysis of gliding in a flying snake, Chrysopelea paradisi

 

Socha, J.J.*, M. LaBarbera, and T. O’Dempsey. 2005.  Journal of Experimental Biology 208 (10): 1817-1833.

 

Movies | Cover image | Download: [pdf]  [pdf with cover]  [Inside JEB]

 
Effects of size and behavior on aerial performance of two species of flying snakes (Chrysopelea)

 

Socha, J.J.* and M. LaBarbera. 2005.  Journal of Experimental Biology 208 (10): 1835-1847.

 

Movies | Cover image | Download: [pdf]  [pdf with cover]  [Inside JEB]

 
Chrysopelea ornata, C. paradisi (Flying Snakes). Behavior

 

Socha, J.J.* and C.A. Sidor*. 2005.  Herpetological Review 36(2): 190-191.

 

| Download: [pdf]

2002
 
Gliding flight in the paradise tree snake

 

Socha, J.J.* 2002. Nature 418: 603-604.

 

| Download: [pdf]